MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-27-P2

Family name MIR-27 (all species)
Seed UCACAGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-27b
Paralogues Gga-Mir-27-P3 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cja-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Eca-Mir-27-P2  Ete-Mir-27-P2  Gja-Mir-27-P2  Gmo-Mir-27-P2b  Hsa-Mir-27-P2  Laf-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mal-Mir-27-P2a  Mal-Mir-27-P2b  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmr-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Neu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pab-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Tni-Mir-27-P2b  Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xtr-Mir-27-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 Z: 41660880-41660942 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P2)		 Mir-23-P2 Z: 41660640-41660699 [+] UCSC Ensembl
Mir-27-P2 Z: 41660880-41660942 [+] UCSC Ensembl
Mir-24-P2 Z: 41661400-41661459 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAGACGGAGACCUCUCUGGUGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGUUUCCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAAGGUGAGAUGAGGAUGUUU
Get precursor sequence
Structure
        10            20        30        40        50        60  
ACUGAGACGGAGACCUC----|  GGUG                  AUUG       GUGAUUGU 
                     UCU    AGGUGCAGAGCUUAGCUG    GUGAACA        \
                     AGA    UCCACGUCUUGAAUCGGU    CACUUGU        U
UUUGUAGGAGUAGAGUGGAAG^  AG--                  GA--       UUCUCCCU 
 120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-27-P2_5p*
mirBase accessionMIMAT0026547
Sequence 
0- AGAGCUUAGCUGAUUGGUGAACA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-27b-5p
miRDB: MIMAT0026547
Mature sequence

Gga-Mir-27-P2_3p
mirBase accessionMIMAT0001187
Sequence 
42- UUCACAGUGGCUAAGUUCUGC -63
Get sequence
Proposed targets TargetScanVert: gga-miR-27b-3p
miRDB: MIMAT0001187