Mir-27-P2

MirGeneDB ID

Loc-Mir-27-P2

Family name

MIR-27 (all species)

Seed

UCACAGU

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-27-P1 Loc-Mir-27-P3 Loc-Mir-27-P4

Orthologues

Aca-Mir-27-P2 Ami-Mir-27-P2 Bta-Mir-27-P2 Cfa-Mir-27-P2 Cja-Mir-27-P2 Cli-Mir-27-P2 Cmi-Mir-27-P2 Cpi-Mir-27-P2 Cpo-Mir-27-P2 Dno-Mir-27-P2 Dre-Mir-27-P2a Dre-Mir-27-P2b Eca-Mir-27-P2 Ete-Mir-27-P2 Gga-Mir-27-P2 Gja-Mir-27-P2 Gmo-Mir-27-P2b Hsa-Mir-27-P2 Laf-Mir-27-P2 Lch-Mir-27-P2 Mal-Mir-27-P2a Mal-Mir-27-P2b Mdo-Mir-27-P2 Mml-Mir-27-P2 Mmr-Mir-27-P2 Mmu-Mir-27-P2 Mun-Mir-27-P2 Neu-Mir-27-P2 Oan-Mir-27-P2 Ocu-Mir-27-P2 Pab-Mir-27-P2 Pbv-Mir-27-P2 Pma-Mir-27-o2 Rno-Mir-27-P2 Sha-Mir-27-P2 Spt-Mir-27-P2 Sto-Mir-27-P2 Tgu-Mir-27-P2 Tni-Mir-27-P2b Xla-Mir-27-P2c Xla-Mir-27-P2d Xtr-Mir-27-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG2: 32741690-32741752 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGAGAAAAUGACCUCUCCAUCAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUACUUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAGGGUGAGAAUUAAGCCAGG

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Structure

        10        20           30        40        50        60  
GCUGAGAAAAUGACCUCUCCA---|  A                 AUUG       GUGAUUGA 
                        UCA GGUGCAGAGCUUAGCUG    GUGAACA        \
                        AGU CCACGUCUUGAAUCGGU    CACUUGU        U
GGACCGAAUUAAGAGUGGGAGAGA^  -                 GA--       UUCUUCAU 
 120       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-27-P2_5p*

mirBase accession

None

Sequence

0- AGAGCUUAGCUGAUUGGUGAACA -23

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Mature sequence

Loc-Mir-27-P2_3p

mirBase accession

None

Sequence

42- UUCACAGUGGCUAAGUUCUGC -63

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