| MirGeneDB ID | Gmo-Mir-27-P2b |
|---|
| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-27b
|
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| Paralogues |
Gmo-Mir-27-P1
Gmo-Mir-27-P3
Gmo-Mir-27-P4a
Gmo-Mir-27-P4b
|
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| Orthologues |
Aca-Mir-27-P2
Ami-Mir-27-P2
Bta-Mir-27-P2
Cfa-Mir-27-P2
Cja-Mir-27-P2
Cli-Mir-27-P2
Cmi-Mir-27-P2
Cpi-Mir-27-P2
Cpo-Mir-27-P2
Dno-Mir-27-P2
Dre-Mir-27-P2b
Eca-Mir-27-P2
Ete-Mir-27-P2
Gga-Mir-27-P2
Gja-Mir-27-P2
Hsa-Mir-27-P2
Laf-Mir-27-P2
Lch-Mir-27-P2
Loc-Mir-27-P2
Mal-Mir-27-P2b
Mdo-Mir-27-P2
Mml-Mir-27-P2
Mmr-Mir-27-P2
Mmu-Mir-27-P2
Mun-Mir-27-P2
Neu-Mir-27-P2
Oan-Mir-27-P2
Ocu-Mir-27-P2
Pab-Mir-27-P2
Pbv-Mir-27-P2
Pma-Mir-27-o2
Rno-Mir-27-P2
Sha-Mir-27-P2
Spt-Mir-27-P2
Sto-Mir-27-P2
Tgu-Mir-27-P2
Tni-Mir-27-P2b
Xtr-Mir-27-P2
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig145249: 115-177 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCGCUGUAACCUCUGUCUCCAGCCAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUCUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAGGAGAGCAUGACCCUGAGCACCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCGCUGUAACCUCUGUC----| AGC AUUG GUGAUUGA
UCC CAGGUGCAGAGCUUAGCUG GUGAACA \
AGG GUCCACGUCUUGAAUCGGU CACUUGU U
GACCACGAGUCCCAGUACGAG^ A-- GA-- UUCUCCUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-27-P2b_5p* |
| mirBase accession | MIMAT0044008 |
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| Sequence |
0- AGAGCUUAGCUGAUUGGUGAACA -23
Get sequence
|
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| Mature sequence |
Gmo-Mir-27-P2b_3p |
| mirBase accession | MIMAT0044009 |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCUGC -63
Get sequence
|
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