MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-27-P4a

Family name MIR-27 (all species)
Seed UCACAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-27a-2
Paralogues Gmo-Mir-27-P1  Gmo-Mir-27-P2b  Gmo-Mir-27-P3  Gmo-Mir-27-P4b 
Orthologues Cmi-Mir-27-P4  Dre-Mir-27-P4a  Lch-Mir-27-P4  Loc-Mir-27-P4  Mal-Mir-27-P4a  Sto-Mir-27-P4  Tni-Mir-27-P4a  Xtr-Mir-27-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1112: 350547-350610 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4a)
Mir-24-P4a GeneScaffold_1112: 349423-349481 [-] UCSC Ensembl
Mir-27-P4a GeneScaffold_1112: 350547-350610 [-] UCSC Ensembl
Mir-23-P4a GeneScaffold_1112: 351353-351416 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAGCGAGCCAGUGAGUCGCCCAGGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCAAUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCCGAGGUGAAAUAGAUGAUGGUGUCGAC
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Structure
        10          20        30        40        50        60  
GCGAGCGAGCCAGUGAG--|    CA      A           AUUG      AUUGAUCCC 
                   UCGCC  GGGCAC GAGCUUAGCUA    GUGAGC         U
                   AGUGG  CCCGUG CUUGAAUCGGU    CACUUG         G
CAGCUGUGGUAGUAGAUAA^    AG      A           GA--      UUGUGUAAC 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-27-P4a_5p*

mirBase accessionMIMAT0044101
Sequence
0- AGAGCUUAGCUAAUUGGUGAGC -22
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Mature sequence

Gmo-Mir-27-P4a_3p

mirBase accessionMIMAT0044102
Sequence
43- UUCACAGUGGCUAAGUUCAGU -64
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