MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-27-P4

Family name MIR-27 (all species)
Seed UCACAGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-27c-1
Paralogues Xtr-Mir-27-P2  Xtr-Mir-27-P3 
Orthologues Cmi-Mir-27-P4  Dre-Mir-27-P4a  Gmo-Mir-27-P4a  Gmo-Mir-27-P4b  Lch-Mir-27-P4  Loc-Mir-27-P4  Mal-Mir-27-P4a  Mal-Mir-27-P4b  Sto-Mir-27-P4  Tni-Mir-27-P4a  Tni-Mir-27-P4b  Xla-Mir-27-P4c  Xla-Mir-27-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr4: 73605412-73605473 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4)		 Mir-23-P4 chr4: 73605123-73605184 [+] UCSC Ensembl
Mir-27-P4 chr4: 73605412-73605473 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUACAAUAUUGGAAUCCUCUAGAGAGGCAGGACUUAGCUGGCUCUGUGAACAGGUCUUGUGUGUCAAUGUUCACAGUGGCUAAGUUCCACCCCACUGGGAAACAUCAUUCUGUAUGUGCA
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Structure
        10          20        30        40        50        60  
GGGUACAAUAUUGGAAUCC--|    AGA  CA           GCU         GGUCUUG 
                     UCUAG   GG  GGACUUAGCUG   CUGUGAACA       \
                     GGGUC   CC  CUUGAAUCGGU   GACACUUGU       U
ACGUGUAUGUCUUACUACAAA^    ACC  AC           ---         AACUGUG 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-27-P4_5p*
mirBase accessionNone
Sequence 
0- AGGACUUAGCUGGCUCUGUGAACA -24
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Mature sequence

Xtr-Mir-27-P4_3p
mirBase accessionMIMAT0003675
Sequence 
41- UUCACAGUGGCUAAGUUCCAC -62
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Proposed targets TargetScanVert: xtr-miR-27c