MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-27-P4d

Family name MIR-27 (all species)
Seed GGACUUA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xla-Mir-27-P4c 
Orthologues Cmi-Mir-27-P4  Lch-Mir-27-P4  Loc-Mir-27-P4  Sto-Mir-27-P4  Xtr-Mir-27-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030731.1: 64137244-64137306 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUACAAUAUUGAAAUCCUCUAGAGGGGCAGGACUUAGCUGGCUCUGUGAACAGGUCUUUUGUGUUCAAUGUUCACAGUGGCUAAGUUCCAACCCACUGGGGAACAUACUUCUAUAUAUAUA
Get precursor sequence
Structure
        10          20        30        40        50        60  
GUGUACAAUAUUGAAAUC--|     A   GCA           GCU         GGUCUUU 
                    CUCUAG GGG   GGACUUAGCUG   CUGUGAACA       U
                    GGGGUC CCC   CUUGAAUCGGU   GACACUUGU       G
AUAUAUAUAUCUUCAUACAA^     A   AAC           ---         AACUUGU 
 120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-27-P4d_5p
mirBase accessionNone
Sequence 
0- AGGACUUAGCUGGCUCUGUGAACA -24
Get sequence
Star sequence

Xla-Mir-27-P4d_3p*
mirBase accessionNone
Sequence 
42- UUCACAGUGGCUAAGUUCCAA -63
Get sequence