MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-27-P3c

Family name MIR-27 (all species)
Seed UCACAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xla-Mir-27-P3d  Xla-Mir-27-P4c  Xla-Mir-27-P4d 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xtr-Mir-27-P3 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 133946820-133946881 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3c)		 Mir-23-P3c NC_030728.1: 133946064-133946127 [+] UCSC Ensembl
Mir-24-P3c NC_030728.1: 133946953-133947013 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAACUCCUCAGAGACGUGCCUGAGAGGCUCAGGGCUUAGCUGUAUUGUGAGCACUGUUACUCUCGCACCUGUUCACAGUGGCUAAGUUCCGCCCCUCUCUGGCGCACCCUUCACUUUGGCCA
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Structure
        10          20        30        40        50        60 
AAACUCCUCAGAGACGU--|  U      CUCA          GU          CUGUUAC 
                   GCC GAGAGG    GGGCUUAGCU  AUUGUGAGCA       U
                   CGG CUCUCC    CUUGAAUCGG  UGACACUUGU       C
ACCGGUUUCACUUCCCACG^  U      CCGC          --          CCACGCU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-27-P3c_5p*
mirBase accessionNone
Sequence 
0- AGGGCUUAGCUGUAUUGUGAGCA -23
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Mature sequence

Xla-Mir-27-P3c_3p
mirBase accessionNone
Sequence 
41- UUCACAGUGGCUAAGUUCCGC -62
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