MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-27c
Paralogues Tni-Mir-27-P1  Tni-Mir-27-P2b  Tni-Mir-27-P4a  Tni-Mir-27-P4b 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 3: 8970188-8970245 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)		 Mir-23-P3 3: 8969974-8970035 [+] UCSC Ensembl
Mir-27-P3 3: 8970188-8970245 [+] UCSC Ensembl
Mir-24-P3 3: 8971072-8971130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGACCAUGUGUCCCGGCUGUGCGGCGGCAGGACUUAACCCACAUGUGAACAGUGAGUGUGCCGUGUUCACAGUGGUUAAGUUCUGCCGCCGCAGGGCUGCAACCUGCGGGAGGAAG
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Structure
        10          20        30        40        50         
AAUGACCAUGUGUCCCG--|  G                    C  A        GUGAG 
                   GCU UGCGGCGGCAGGACUUAACC AC UGUGAACA     U
                   CGG ACGCCGCCGUCUUGAAUUGG UG ACACUUGU     G
GAAGGAGGGCGUCCAACGU^  G                    -  -        GCCGU 
      110       100        90        80          70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-27-P3_5p*
mirBase accessionNone
Sequence 
0- AGGACUUAACCCACAUGUGAACA -23
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Mature sequence

Tni-Mir-27-P3_3p
mirBase accessionMIMAT0003078
Sequence 
37- UUCACAGUGGUUAAGUUCUGC -58
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