| MirGeneDB ID | Cja-Mir-27-P3 |
|---|---|
| Family name | MIR-27 (all species) |
| Seed | UCACAGU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-27-P2 |
| Orthologues | Aca-Mir-27-P3 Ami-Mir-27-P3 Bta-Mir-27-P3 Cfa-Mir-27-P3 Cmi-Mir-27-P3 Cpi-Mir-27-P3 Cpo-Mir-27-P3 Dno-Mir-27-P3 Dre-Mir-27-P3 Eca-Mir-27-P3 Ete-Mir-27-P3 Gga-Mir-27-P3 Gja-Mir-27-P3 Gmo-Mir-27-P3 Hsa-Mir-27-P3 Laf-Mir-27-P3 Lch-Mir-27-P3 Loc-Mir-27-P3 Mal-Mir-27-P3 Mdo-Mir-27-P3 Mml-Mir-27-P3 Mmr-Mir-27-P3 Mmu-Mir-27-P3 Neu-Mir-27-P3 Oan-Mir-27-P3 Ocu-Mir-27-P3 Pab-Mir-27-P3 Pbv-Mir-27-P3 Rno-Mir-27-P3 Sha-Mir-27-P3 Sto-Mir-27-P3a Sto-Mir-27-P3b Tgu-Mir-27-P3 Tni-Mir-27-P3 Xla-Mir-27-P3c Xla-Mir-27-P3d Xtr-Mir-27-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 12279802-12279863 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCCCCGACGCCUGUGCCUGGCCUGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCACUCCAAGUCAUGUUCACAGUGGCUAAGUUCCGCCCCCCAGGCCCUCACCUCCUCCGGCCCUGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCCCCGACGCCUGUGCCU--| A A A UG U GGGUUCAC GGCCUG GG GC GGGCUUAGC CU GUGAGCA \ CCGGAC CC CG CUUGAAUCG GA CACUUGU U CGUCCCGGCCUCCUCCACUC^ C C C GU - ACUGAACC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-27-P3_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGGCUUAGCUGCUUGUGAGCA -22
Get sequence
|
| Mature sequence | Cja-Mir-27-P3_3p |
| mirBase accession | None |
| Sequence |
41- UUCACAGUGGCUAAGUUCCGC -62
Get sequence
|
