MirGeneDB ID | Gja-Mir-27-P3 |
Family name |
MIR-27 (all species) |
Seed |
UCACAGU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-27-P2
|
Orthologues |
Aca-Mir-27-P3
Ami-Mir-27-P3
Bta-Mir-27-P3
Cfa-Mir-27-P3
Cja-Mir-27-P3
Cmi-Mir-27-P3
Cpi-Mir-27-P3
Cpo-Mir-27-P3
Dno-Mir-27-P3
Dre-Mir-27-P3
Eca-Mir-27-P3
Ete-Mir-27-P3
Gga-Mir-27-P3
Gmo-Mir-27-P3
Hsa-Mir-27-P3
Laf-Mir-27-P3
Lch-Mir-27-P3
Loc-Mir-27-P3
Mal-Mir-27-P3
Mdo-Mir-27-P3
Mml-Mir-27-P3
Mmr-Mir-27-P3
Mmu-Mir-27-P3
Neu-Mir-27-P3
Oan-Mir-27-P3
Ocu-Mir-27-P3
Pab-Mir-27-P3
Pbv-Mir-27-P3
Rno-Mir-27-P3
Sha-Mir-27-P3
Sto-Mir-27-P3a
Sto-Mir-27-P3b
Tgu-Mir-27-P3
Tni-Mir-27-P3
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xtr-Mir-27-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015175453.1: 135915-135976 [-]
|
Precursor (pre-Mir +30nt flank) |
CGGGGAGCCCUCCUUCCGACGGCGAGGGACAGGGCUUGGUCCACCUGUGAACAGCGUGUGGCUCUGCCGUGUUCACAGUGGCUAAGUUCCGCCUCUUGCCGCCCGCUCUCCCCCCGCCGCCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGGGAGCCCUCCUUCCGA-- -| ACA U C GCGUGUG
CGGCGAG GG GGGCUUGG CCAC UGUGAACA G
GCCGUUC CC CUUGAAUC GGUG ACACUUGU C
GCCGCCGCCCCCCUCUCGCCC U^ GC- - - GCCGUCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gja-Mir-27-P3_5p* |
mirBase accession | None |
Sequence |
0- AGGGCUUGGUCCACCUGUGAACA -23
Get sequence
|
Mature sequence |
Gja-Mir-27-P3_3p |
mirBase accession | None |
Sequence |
41- UUCACAGUGGCUAAGUUCCGC -62
Get sequence
|