MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-27-P1  Mal-Mir-27-P2a  Mal-Mir-27-P2b  Mal-Mir-27-P4a  Mal-Mir-27-P4b 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884862.1: 448987-449048 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUGUCCAUAAAACCUGGCUGCGCGGCAGCAGGACUUAACCCACGUGUGAACAGUAUGUGUUCACCAUGUUCACAGUGGUUAAGUUCUGCCGCCACACGGCUUCAGCCUGCAAGGGAAGGG
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Structure
        10          20        30        40        50        60 
AGAUGUCCAUAAAACCU--|    CGC   A             C  G        GUAUGU 
                   GGCUG   GGC GCAGGACUUAACC AC UGUGAACA      G
                   UCGGC   CCG CGUCUUGAAUUGG UG ACACUUGU      U
GGGAAGGGAACGUCCGACU^    ACA   C             -  -        ACCACU 
120       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-27-P3_5p*

mirBase accessionNone
Sequence
0- CAGGACUUAACCCACGUGUGAACA -24
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Mature sequence

Mal-Mir-27-P3_3p

mirBase accessionNone
Sequence
40- UUCACAGUGGUUAAGUUCUGCC -62
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