| MirGeneDB ID | Ocu-Mir-27-P3 |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
UCACAGU |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ocu-Mir-27-P2
|
|---|
| Orthologues |
Aca-Mir-27-P3
Ami-Mir-27-P3
Bta-Mir-27-P3
Cfa-Mir-27-P3
Cja-Mir-27-P3
Cmi-Mir-27-P3
Cpi-Mir-27-P3
Cpo-Mir-27-P3
Dno-Mir-27-P3
Dre-Mir-27-P3
Eca-Mir-27-P3
Ete-Mir-27-P3
Gga-Mir-27-P3
Gja-Mir-27-P3
Gmo-Mir-27-P3
Hsa-Mir-27-P3
Laf-Mir-27-P3
Lch-Mir-27-P3
Loc-Mir-27-P3
Mal-Mir-27-P3
Mdo-Mir-27-P3
Mml-Mir-27-P3
Mmr-Mir-27-P3
Mmu-Mir-27-P3
Neu-Mir-27-P3
Oan-Mir-27-P3
Pab-Mir-27-P3
Pbv-Mir-27-P3
Rno-Mir-27-P3
Sha-Mir-27-P3
Sto-Mir-27-P3a
Sto-Mir-27-P3b
Tgu-Mir-27-P3
Tni-Mir-27-P3
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xtr-Mir-27-P3
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(oryCun2_add) |
VIYN01006261.1: 192288-192349 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGCUGGACAGCACCGCCCGGCCCGAGGAGCAGGGCUUAGCUGCUUGUGAACAGGUUCCCCCCCAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCUCUGGCCCCUACCUCCGCCUGCCUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGCUGGACAGCACCGCCC--| C A A UG U GGUUCCCC
GGCC GAGG GC GGGCUUAGC CU GUGAACA \
CCGG CUCC CG CUUGAAUCG GA CACUUGU C
CCGUCCGUCCGCCUCCAUCC^ U C C GU - GCUGAACC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Not in assembly but in trace archives. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-27-P3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCUUAGCUGCUUGUGAACA -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-27-P3_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UUCACAGUGGCUAAGUUCCGC -62
Get sequence
|
|---|
