MirGeneDB 3.0

MirGeneDB ID

Cpi-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-27a
Paralogues Cpi-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584948: 868327-868390 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-24-P3 JH584948: 868114-868173 [-] UCSC Ensembl
Mir-27-P3 JH584948: 868327-868390 [-] UCSC Ensembl
Mir-23-P3 JH584948: 868693-868754 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCCAGCGCCCGCCCGAUACCGGGGUGCAGGGCUUAGCUCACCUGUGAACAGAGUUCGCAUCCGUAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCGGGGUCCGUUCCCUGGGGCUCGGAA
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Structure
        10          20        30        40        50        60  
CUGCCCAGCGCCCGCCC--| UA      U  A         U   C        GAGUUCGC 
                   GA  CCGGGG GC GGGCUUAGC CAC UGUGAACA        A
                   CU  GGCCCC CG CUUGAAUCG GUG ACACUUGU        U
AAGGCUCGGGGUCCCUUGC^ GG      C  C         -   -        GCUAUGCC 
  120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-27-P3_5p*

mirBase accessionMIMAT0037664
Sequence
0- AGGGCUUAGCUCACCUGUGAACA -23
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Mature sequence

Cpi-Mir-27-P3_3p

mirBase accessionMIMAT0037665
Sequence
43- UUCACAGUGGCUAAGUUCCGC -64
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