Mir-27-P3

MirGeneDB ID

Cpi-Mir-27-P3

Family name

MIR-27 (all species)

Seed

UCACAGU

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-27a

Paralogues

Cpi-Mir-27-P2

Orthologues

Aca-Mir-27-P3 Ami-Mir-27-P3 Bta-Mir-27-P3 Cfa-Mir-27-P3 Cja-Mir-27-P3 Cmi-Mir-27-P3 Cpo-Mir-27-P3 Dno-Mir-27-P3 Dre-Mir-27-P3 Eca-Mir-27-P3 Ete-Mir-27-P3 Gga-Mir-27-P3 Gja-Mir-27-P3 Gmo-Mir-27-P3 Hsa-Mir-27-P3 Laf-Mir-27-P3 Lch-Mir-27-P3 Loc-Mir-27-P3 Mal-Mir-27-P3 Mdo-Mir-27-P3 Mml-Mir-27-P3 Mmr-Mir-27-P3 Mmu-Mir-27-P3 Neu-Mir-27-P3 Oan-Mir-27-P3 Ocu-Mir-27-P3 Pab-Mir-27-P3 Pbv-Mir-27-P3 Rno-Mir-27-P3 Sha-Mir-27-P3 Sto-Mir-27-P3a Sto-Mir-27-P3b Tgu-Mir-27-P3 Tni-Mir-27-P3 Xla-Mir-27-P3c Xla-Mir-27-P3d Xtr-Mir-27-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584948: 868327-868390 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-27-P3)

Mir-24-P3 JH584948: 868114-868173 [-] UCSC Ensembl
Mir-27-P3 JH584948: 868327-868390 [-] UCSC Ensembl
Mir-23-P3 JH584948: 868693-868754 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCCCAGCGCCCGCCCGAUACCGGGGUGCAGGGCUUAGCUCACCUGUGAACAGAGUUCGCAUCCGUAUCGUGUUCACAGUGGCUAAGUUCCGCCCCCCGGGGUCCGUUCCCUGGGGCUCGGAA

Get precursor sequence

Structure

        10          20        30        40        50        60  
CUGCCCAGCGCCCGCCC--| UA      U  A         U   C        GAGUUCGC 
                   GA  CCGGGG GC GGGCUUAGC CAC UGUGAACA        A
                   CU  GGCCCC CG CUUGAAUCG GUG ACACUUGU        U
AAGGCUCGGGGUCCCUUGC^ GG      C  C         -   -        GCUAUGCC 
  120       110       100        90         80         70