MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-23a
Paralogues Cpi-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584948: 868693-868754 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)		 Mir-24-P3 JH584948: 868114-868173 [-] UCSC Ensembl
Mir-27-P3 JH584948: 868327-868390 [-] UCSC Ensembl
Mir-23-P3 JH584948: 868693-868754 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUGCCGGCUUCUCCUGCCCCUGCCAGCUGGGGUUCCUGGUGAUGCGAUUUUUAUCCUACCACCCAAAAUCACAUUGCCAGGGAUUUCCAACGGGCGGCGGGCCACAGCGCCCAGGAGACC
Get precursor sequence
Structure
        10         20         30         40        50          
CCAUGCCGGCUUCUCCU-    -     AGC   -|        UG   C     UUAUCCU 
                  GCCC CUGCC   UGG GGUUCCUGG  AUG GAUUU       \
                  CGGG GGCGG   ACC UUAGGGACC  UAC CUAAA       A
CCAGAGGACCCGCGACAC    C     GCA   U^        GU   A     ACCCACC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-23-P3_5p*
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGUGAUGCGAUUU -22
Get sequence
Mature sequence

Cpi-Mir-23-P3_3p
mirBase accessionMIMAT0037655
Sequence 
39- AUCACAUUGCCAGGGAUUUCCAA -62
Get sequence