Mir-23-P3

MirGeneDB ID

Hsa-Mir-23-P3

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-23a

Paralogues

Hsa-Mir-23-P2

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr19: 13836593-13836651 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-24-P3 chr19: 13836289-13836348 [-] UCSC Ensembl
Mir-27-P3 chr19: 13836447-13836508 [-] UCSC Ensembl
Mir-23-P3 chr19: 13836593-13836651 [-] UCSC Ensembl
Mir-181-P1c chr19: 13874725-13874785 [+] UCSC Ensembl
Mir-181-P2c chr19: 13874910-13874972 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCCCCUCACCCCUGUGCCACGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUUCCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCUCUGCCACCGAGGAUGCU

Get precursor sequence

Structure

        10          20        30         40        50        
GCCCCCCUCACCCCUGU-  -  C  C   C   -|        G    G     GCUUC 
                  GC CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  CG GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
UCGUAGGAGCCACCGUCU  A  C  A   A   U^        G    A     CACUG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-23-P3_5p*

mirBase accession

MIMAT0004496

Sequence

0- GGGGUUCCUGGGGAUGGGAUUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004496
TargetScanVert: hsa-miR-23a-5p
TargetMiner: hsa-miR-23a-5p
miRDB: MIMAT0004496

Mature sequence

Hsa-Mir-23-P3_3p

mirBase accession

MIMAT0000078

Sequence

36- AUCACAUUGCCAGGGAUUUCCAA -59

Get sequence

Proposed targets

microrna.org: MIMAT0000078
TargetScanVert: hsa-miR-23a-3p
TargetMiner: hsa-miR-23a-3p
miRDB: MIMAT0000078