MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-23a
Paralogues Ami-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713323.1: 200394-200456 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-23-P3)		 Mir-23-P3 NW_017713323.1: 200394-200456 [+] UCSC
Mir-27-P3 NW_017713323.1: 200584-200646 [+] UCSC
Mir-24-P3 NW_017713323.1: 200859-200919 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CACAGCCCUCUCUCCCUGCCACAGCCAGCUGGGGUUCCUGGUGAUGCGAUUUUUUUACCCACUGCCCAAAAUCACAUUGCCAGGGAUUUCCAACUGGCUGCGAGCCCCAGCGCCAAGGAGACA
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Structure
        10         20         30         40        50        60
CACAGCCCUCUCUCCCU-  CA-       C   -|        UG   C     UUUUACC 
                  GC   CAGCCAG UGG GGUUCCUGG  AUG GAUUU       C
                  CG   GUCGGUC ACC UUAGGGACC  UAC CUAAA       A
ACAGAGGAACCGCGACCC  AGC       A   U^        GU   A     ACCCGUC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-23-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGUGAUGCGAUUU -22
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Mature sequence

Ami-Mir-23-P3_3p
mirBase accessionMIMAT0038058
Sequence 
40- AUCACAUUGCCAGGGAUUUCCAA -63
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