MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Horse (Equus caballus)
MiRBase ID eca-mir-23a
Paralogues Eca-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)		 Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGCCCCCACCCCUCUGCCACGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUGCUUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGUGCCCUGCCUCUGGGGCCGCC
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Structure
        10          20        30         40        50        
AGUGCCCCCACCCCUCU-  -  C  C   C   -|        G    G     GCUGC 
                  GC CA GG CGG UGG GGUUCCUGG GAUG GAUUU     U
                  CG GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
CCGCCGGGGUCUCCGUCC  U  C  A   A   U^        G    A     CACUG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-23-P3_5p*
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGGGAUGGGAUUU -22
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Mature sequence

Eca-Mir-23-P3_3p
mirBase accessionMIMAT0012986
Sequence 
36- AUCACAUUGCCAGGGAUUUCCAA -59
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