MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-23-P1  Lch-Mir-23-P2  Lch-Mir-23-P4 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH126758.1: 380329-380387 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGUUGAAGCCGUUGUGCUGUUGUCAAUGGGGGUUCCUGGUAACGUGAUUUUAUAACACAAGUAGAAUCACAUUGCCAGGGAUUUCCAACUGAUAACAAGCAGUAAAUUCCUCAAGAG
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Structure
        10         20         30        40        50         
UCUGUUGAAGCCGUUGUGC-        A-|  GG           C       UAUAAC 
                    UGUUGUCA  UGG  GUUCCUGGUAA GUGAUUU      \
                    ACAAUAGU  ACC  UAGGGACCGUU CACUAAG      A
GAGAACUCCUUAAAUGACGA        CA^  UU           A       AUGAAC 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Star sequence

Lch-Mir-23-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGUAACGUGAUUU -22
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Mature sequence

Lch-Mir-23-P3_3p (predicted)
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUUCCA -59
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