MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021936.1: 12279947-12280005 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCCCUCACCCCUGUGCCAUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUGCCUAUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCUCUGCCACCGAGGAUGCC
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Structure
        10          20        30         40        50        
UGCCCCCUCACCCCUGU-  -  U  C   C   -|        G    G     GCUGC 
                  GC CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  CG GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
CCGUAGGAGCCACCGUCU  A  C  A   A   U^        G    A     CACUA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Cja-Mir-23-P3_5p*
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGGGAUGGGAUUU -22
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Mature sequence

Cja-Mir-23-P3_3p
mirBase accessionNone
Sequence 
36- AUCACAUUGCCAGGGAUUUCCAA -59
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