Mir-23-P3

MirGeneDB ID

Rno-Mir-23-P3

Family name

MIR-23 (all species)

Seed

UCACAUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-23a

Paralogues

Rno-Mir-23-P2

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr19: 25318591-25318649 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-181-P2c chr19: 25290062-25290123 [-] UCSC Ensembl
Mir-181-P1c chr19: 25290233-25290293 [-] UCSC Ensembl
Mir-23-P3 chr19: 25318591-25318649 [+] UCSC Ensembl
Mir-27-P3 chr19: 25318749-25318811 [+] UCSC Ensembl
Mir-24-P3 chr19: 25318887-25318944 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCUGUCCCCUCACUGUGCCUCGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGAUGCCAGUCACAAAUCACAUUGCCAGGGAUUUCCAACUGACCCUGUGCCCUGCCUUGGGGCCUCGU

Get precursor sequence

Structure

        10         20         30         40        50        
UGCUGUCCCCUCACUGU-  CUC-  C   C   -|        G    G     GAUGC 
                  GC    GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  CG    CC GUC ACC UUAGGGACC UUAC CUAAA     A
UGCUCCGGGGUUCCGUCC  UGUC  A   A   U^        G    A     CACUG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-23-P3_5p*

mirBase accession

MIMAT0004712

Sequence

0- GGGGUUCCUGGGGAUGGGAUUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004712
TargetScanVert: rno-miR-23a-5p
miRDB: MIMAT0004712

Mature sequence

Rno-Mir-23-P3_3p

mirBase accession

MIMAT0000792

Sequence

36- AUCACAUUGCCAGGGAUUUCCAA -59

Get sequence

Proposed targets

microrna.org: MIMAT0000792
TargetScanVert: rno-miR-23a-3p
miRDB: MIMAT0000792