MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-27a
Paralogues Rno-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr19: 25318749-25318811 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)		 Mir-181-P2c chr19: 25290062-25290123 [-] UCSC Ensembl
Mir-181-P1c chr19: 25290233-25290293 [-] UCSC Ensembl
Mir-23-P3 chr19: 25318591-25318649 [+] UCSC Ensembl
Mir-27-P3 chr19: 25318749-25318811 [+] UCSC Ensembl
Mir-24-P3 chr19: 25318887-25318944 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCCCAGCAUGACCACUGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGGACCCCAUCUCCCCAGGCCGCUGC
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Structure
        10          20         30        40        50        60 
AAGCCCAGCAUGACCACU--  -| UGU  A  A         UG  U       AGGUCUAC 
                    GG CC   GG GC GGGCUUAGC  CU GUGAGCA        A
                    CC GG   CC CG CUUGAAUCG  GA CACUUGU        G
CGUCGCCGGACCCCUCUACC  A^ UCC  -  C         GU  -       GCUGAAAC 
 120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-27-P3_5p*
mirBase accessionMIMAT0004715
Sequence 
0- AGGGCUUAGCUGCUUGUGAGCA -22
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Proposed targets microrna.org: MIMAT0004715
TargetScanVert: rno-miR-27a-5p
miRDB: MIMAT0004715
Mature sequence

Rno-Mir-27-P3_3p
mirBase accessionMIMAT0000799
Sequence 
42- UUCACAGUGGCUAAGUUCCGC -63
Get sequence
Proposed targets microrna.org: MIMAT0000799
TargetScanVert: rno-miR-27a-3p
miRDB: MIMAT0000799