Mir-27-P3

MirGeneDB ID

Rno-Mir-27-P3

Family name

MIR-27 (all species)

Seed

UCACAGU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-27a

Paralogues

Rno-Mir-27-P2

Orthologues

Aca-Mir-27-P3 Ami-Mir-27-P3 Bta-Mir-27-P3 Cfa-Mir-27-P3 Cja-Mir-27-P3 Cmi-Mir-27-P3 Cpi-Mir-27-P3 Cpo-Mir-27-P3 Dno-Mir-27-P3 Dre-Mir-27-P3 Eca-Mir-27-P3 Ete-Mir-27-P3 Gga-Mir-27-P3 Gja-Mir-27-P3 Gmo-Mir-27-P3 Hsa-Mir-27-P3 Laf-Mir-27-P3 Lch-Mir-27-P3 Loc-Mir-27-P3 Mal-Mir-27-P3 Mdo-Mir-27-P3 Mml-Mir-27-P3 Mmr-Mir-27-P3 Mmu-Mir-27-P3 Neu-Mir-27-P3 Oan-Mir-27-P3 Ocu-Mir-27-P3 Pab-Mir-27-P3 Pbv-Mir-27-P3 Sha-Mir-27-P3 Sto-Mir-27-P3a Sto-Mir-27-P3b Tgu-Mir-27-P3 Tni-Mir-27-P3 Xla-Mir-27-P3c Xla-Mir-27-P3d Xtr-Mir-27-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr19: 25318749-25318811 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-27-P3)

Mir-181-P2c chr19: 25290062-25290123 [-] UCSC Ensembl
Mir-181-P1c chr19: 25290233-25290293 [-] UCSC Ensembl
Mir-23-P3 chr19: 25318591-25318649 [+] UCSC Ensembl
Mir-27-P3 chr19: 25318749-25318811 [+] UCSC Ensembl
Mir-24-P3 chr19: 25318887-25318944 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGCCCAGCAUGACCACUGGCCUGUGGAGCAGGGCUUAGCUGCUUGUGAGCAAGGUCUACAGCAAAGUCGUGUUCACAGUGGCUAAGUUCCGCCCCCUGGACCCCAUCUCCCCAGGCCGCUGC

Get precursor sequence

Structure

        10          20         30        40        50        60 
AAGCCCAGCAUGACCACU--  -| UGU  A  A         UG  U       AGGUCUAC 
                    GG CC   GG GC GGGCUUAGC  CU GUGAGCA        A
                    CC GG   CC CG CUUGAAUCG  GA CACUUGU        G
CGUCGCCGGACCCCUCUACC  A^ UCC  -  C         GU  -       GCUGAAAC 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-27-P3_5p*

mirBase accession

MIMAT0004715

Sequence

0- AGGGCUUAGCUGCUUGUGAGCA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004715
TargetScanVert: rno-miR-27a-5p
miRDB: MIMAT0004715

Mature sequence

Rno-Mir-27-P3_3p

mirBase accession

MIMAT0000799

Sequence

42- UUCACAGUGGCUAAGUUCCGC -63

Get sequence

Proposed targets

microrna.org: MIMAT0000799
TargetScanVert: rno-miR-27a-3p
miRDB: MIMAT0000799