MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-27-P1  Loc-Mir-27-P2  Loc-Mir-27-P4 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG6: 12902378-12902439 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAUGGACUCUCUCAGGCUCUGGAGCAGUAGGACUUACUCCACCUGUGAACACUGUAUGUCUUUCCCAUGUUCACAGUGGUUAAGUUCUGCUGCUUAGAUCUCCCAUUCUGCAUGACUGAC
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Structure
        10           20        30        40        50        60 
AGAAUGGACUCUCUCAGGC---|   G              CU    C        CUGUAUG 
                      UCUG AGCAGUAGGACUUA  CCAC UGUGAACA       U
                      AGAU UCGUCGUCUUGAAU  GGUG ACACUUGU       C
CAGUCAGUACGUCUUACCCUCU^   -              U-    -        ACCCUUU 
120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-27-P3_5p*
mirBase accessionNone
Sequence 
0- AGGACUUACUCCACCUGUGAACA -23
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Mature sequence

Loc-Mir-27-P3_3p
mirBase accessionNone
Sequence 
41- UUCACAGUGGUUAAGUUCUGC -62
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