MirGeneDB ID | Lch-Mir-27-P3 |
---|---|
Family name | MIR-27 (all species) |
Seed | UCACAGU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-27-P1 Lch-Mir-27-P2 Lch-Mir-27-P4 |
Orthologues | Aca-Mir-27-P3 Ami-Mir-27-P3 Bta-Mir-27-P3 Cfa-Mir-27-P3 Cja-Mir-27-P3 Cmi-Mir-27-P3 Cpi-Mir-27-P3 Cpo-Mir-27-P3 Dno-Mir-27-P3 Dre-Mir-27-P3 Eca-Mir-27-P3 Ete-Mir-27-P3 Gga-Mir-27-P3 Gja-Mir-27-P3 Gmo-Mir-27-P3 Hsa-Mir-27-P3 Laf-Mir-27-P3 Loc-Mir-27-P3 Mal-Mir-27-P3 Mdo-Mir-27-P3 Mml-Mir-27-P3 Mmr-Mir-27-P3 Mmu-Mir-27-P3 Neu-Mir-27-P3 Oan-Mir-27-P3 Ocu-Mir-27-P3 Pab-Mir-27-P3 Pbv-Mir-27-P3 Rno-Mir-27-P3 Sha-Mir-27-P3 Sto-Mir-27-P3a Sto-Mir-27-P3b Tgu-Mir-27-P3 Tni-Mir-27-P3 Xla-Mir-27-P3c Xla-Mir-27-P3d Xtr-Mir-27-P3 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126758.1: 377934-377995 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AAAUCUGUCAGUUCUCAGCCUUAUCGGUGCAGGGCUUAGCUUACCUGUGAACAGUUAAAUAGACCUUGUUGUUCACAGUGGCUAAGUUCCGCAUCUCUGGGGCAAAGCACUAACAGUUUAAAGet precursor sequence |
Structure | 10 20 30 40 50 60 AAAUCUGUCAGUUCUCA--| UC A UAC GUUAAAU GCCUUA GGUGC GGGCUUAGCU CUGUGAACA A CGGGGU CUACG CUUGAAUCGG GACACUUGU G AAAUUUGACAAUCACGAAA^ CU C U-- UGUUCCA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Lch-Mir-27-P3_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGGCUUAGCUUACCUGUGAACA -23
Get sequence
|
Mature sequence | Lch-Mir-27-P3_3p (predicted) |
mirBase accession | None |
Sequence |
41- UUCACAGUGGCUAAGUUCCGC -62
Get sequence
|