MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-27-P3d

Family name MIR-27 (all species)
Seed UCACAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xla-Mir-27-P3c  Xla-Mir-27-P4c  Xla-Mir-27-P4d 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xtr-Mir-27-P3 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NW_016694811.1: 2508699-2508760 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUCCUCUGAGACGUUCCUGAGCGGCCCAGGGCUUAGCUGUAUUGUGAGCACUGUCACUCUCGCACCUGUUCACAGUGGCUAAGUUCCGCCCCUCUCUGGCGCACCCUUCACUUUGGCCA
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Structure
        10        20            30        40        50        60 
AAGCUCCUCUGAGACGUUCCU----|  C   CCA          GU          CUGUCAC 
                         GAG GGC   GGGCUUAGCU  AUUGUGAGCA       U
                         CUC CCG   CUUGAAUCGG  UGACACUUGU       C
ACCGGUUUCACUUCCCACGCGGUCU^  C   C--          --          CCACGCU 
120       110       100        90          80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-27-P3d_5p*
mirBase accessionNone
Sequence 
0- AGGGCUUAGCUGUAUUGUGAGCA -23
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Mature sequence

Xla-Mir-27-P3d_3p
mirBase accessionNone
Sequence 
41- UUCACAGUGGCUAAGUUCCGC -62
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