| MirGeneDB ID | Xla-Mir-27-P3d |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
UCACAGU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-27-P2c
Xla-Mir-27-P2d
Xla-Mir-27-P3c
Xla-Mir-27-P4c
Xla-Mir-27-P4d
|
|---|
| Orthologues |
Aca-Mir-27-P3
Ami-Mir-27-P3
Bta-Mir-27-P3
Cfa-Mir-27-P3
Cmi-Mir-27-P3
Cpi-Mir-27-P3
Cpo-Mir-27-P3
Dno-Mir-27-P3
Dre-Mir-27-P3
Ete-Mir-27-P3
Gga-Mir-27-P3
Gja-Mir-27-P3
Gmo-Mir-27-P3
Hsa-Mir-27-P3
Lch-Mir-27-P3
Loc-Mir-27-P3
Mal-Mir-27-P3
Mdo-Mir-27-P3
Mml-Mir-27-P3
Mmu-Mir-27-P3
Oan-Mir-27-P3
Ocu-Mir-27-P3
Pbv-Mir-27-P3
Rno-Mir-27-P3
Sha-Mir-27-P3
Tgu-Mir-27-P3
Tni-Mir-27-P3
Xtr-Mir-27-P3
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694811.1: 2508699-2508760 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGCUCCUCUGAGACGUUCCUGAGCGGCCCAGGGCUUAGCUGUAUUGUGAGCACUGUCACUCUCGCACCUGUUCACAGUGGCUAAGUUCCGCCCCUCUCUGGCGCACCCUUCACUUUGGCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGCUCCUCUGAGACGUUCCU----| C CCA GU CUGUCAC
GAG GGC GGGCUUAGCU AUUGUGAGCA U
CUC CCG CUUGAAUCGG UGACACUUGU C
ACCGGUUUCACUUCCCACGCGGUCU^ C C-- -- CCACGCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Xla-Mir-27-P3d_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCUUAGCUGUAUUGUGAGCA -23
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-27-P3d_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UUCACAGUGGCUAAGUUCCGC -62
Get sequence
|
|---|
