| MirGeneDB ID | Gmo-Mir-27-P3 |
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| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-27c
|
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| Paralogues |
Gmo-Mir-27-P1
Gmo-Mir-27-P2b
Gmo-Mir-27-P4a
Gmo-Mir-27-P4b
|
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| Orthologues |
Aca-Mir-27-P3
Ami-Mir-27-P3
Bta-Mir-27-P3
Cfa-Mir-27-P3
Cmi-Mir-27-P3
Cpi-Mir-27-P3
Cpo-Mir-27-P3
Dno-Mir-27-P3
Dre-Mir-27-P3
Ete-Mir-27-P3
Gga-Mir-27-P3
Gja-Mir-27-P3
Hsa-Mir-27-P3
Lch-Mir-27-P3
Loc-Mir-27-P3
Mal-Mir-27-P3
Mdo-Mir-27-P3
Mml-Mir-27-P3
Mmu-Mir-27-P3
Oan-Mir-27-P3
Ocu-Mir-27-P3
Pbv-Mir-27-P3
Rno-Mir-27-P3
Sha-Mir-27-P3
Sto-Mir-27-P3a
Sto-Mir-27-P3b
Tgu-Mir-27-P3
Tni-Mir-27-P3
Xla-Mir-27-P3c
Xla-Mir-27-P3d
Xtr-Mir-27-P3
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
scaffold03886: 4252-4313 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
ACACACAGAGACAGCAGGUUGCGUGGCAGCAGGACUUAACACGCAUGUGAACAGUGUAAGUGUCCUCCGUGUUCACAGUGGUUAAGUUCUGCCGCCACAAGCCCACACUCAGCCCGGGUCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACACACAGAGACAGCAG---| GC A A A GUGUAAG
GUU GUGGC GCAGGACUUAAC CGC UGUGAACA U
CGA CACCG CGUCUUGAAUUG GUG ACACUUGU G
GACUGGGCCCGACUCACACC^ A- C - - GCCUCCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-27-P3_5p* |
| mirBase accession | MIMAT0044332 |
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| Sequence |
0- AGGACUUAACACGCAUGUGAACA -23
Get sequence
|
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| Mature sequence |
Gmo-Mir-27-P3_3p |
| mirBase accession | MIMAT0044333 |
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| Sequence |
41- UUCACAGUGGUUAAGUUCUGC -62
Get sequence
|
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