MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-27c
Paralogues Gmo-Mir-27-P1  Gmo-Mir-27-P2b  Gmo-Mir-27-P4a  Gmo-Mir-27-P4b 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 scaffold03886: 4252-4313 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACACAGAGACAGCAGGUUGCGUGGCAGCAGGACUUAACACGCAUGUGAACAGUGUAAGUGUCCUCCGUGUUCACAGUGGUUAAGUUCUGCCGCCACAAGCCCACACUCAGCCCGGGUCAG
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Structure
        10           20        30        40        50        60 
ACACACAGAGACAGCAG---|  GC     A            A   A        GUGUAAG 
                    GUU  GUGGC GCAGGACUUAAC CGC UGUGAACA       U
                    CGA  CACCG CGUCUUGAAUUG GUG ACACUUGU       G
GACUGGGCCCGACUCACACC^  A-     C            -   -        GCCUCCU 
120       110       100         90         80         70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-27-P3_5p*
mirBase accessionMIMAT0044332
Sequence 
0- AGGACUUAACACGCAUGUGAACA -23
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Mature sequence

Gmo-Mir-27-P3_3p
mirBase accessionMIMAT0044333
Sequence 
41- UUCACAGUGGUUAAGUUCUGC -62
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