MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-27a
Paralogues Xtr-Mir-27-P2  Xtr-Mir-27-P4 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr3: 129999287-129999348 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-23-P3 chr3: 129998679-129998742 [+] UCSC Ensembl
Mir-27-P3 chr3: 129999287-129999348 [+] UCSC Ensembl
Mir-24-P3 chr3: 129999419-129999478 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCAGAGGAGACGUGCCCAGCCGGCGGCCCAGGGCUUAGCUGUAUUGUGAGCACUGUCACUCUCGCACCUGUUCACAGUGGCUAAGUUCCGCGCCUCUCUGGCACACCCUUCCCUCUGGCCA
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Structure
        10        20          30        40        50        60 
CUCAGAGGAGACGUGCCCA     C--|  CCA          GU          CUGUCAC 
                   GCCGG   GGC   GGGCUUAGCU  AUUGUGAGCA       U
                   CGGUC   CCG   CUUGAAUCGG  UGACACUUGU       C
ACCGGUCUCCCUUCCCACA     UCU^  CGC          --          CCACGCU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-27-P3_5p*

mirBase accessionNone
Sequence
0- AGGGCUUAGCUGUAUUGUGAGCA -23
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Mature sequence

Xtr-Mir-27-P3_3p

mirBase accessionMIMAT0003570
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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Proposed targets TargetScanVert: xtr-miR-27a