MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-27-P3

Family name MIR-27 (all species)
Seed GGGCUUA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-27a
Paralogues Pbv-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cja-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Cpo-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Eca-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Laf-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmr-Mir-27-P3  Mmu-Mir-27-P3  Neu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pab-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953590.1: 99842-99903 [-]
Clustered miRNAs
(< 50kb from Mir-27-P3)
Mir-24-P3 KE953590.1: 99568-99627 [-]
Mir-27-P3 KE953590.1: 99842-99903 [-]
Mir-23-P3 KE953590.1: 100352-100412 [-]
Precursor
(pre-Mir +30nt flank)
GAGACAGGGAUUCCUCAGACUGCCUAGGGUAGGGCUUAGCUCACUUGUGAACAGCGUUUGGUUCAGCCGUGUUCACAGUGGCUAAGUUCCGCCACUUGGAGUCCAUUCUCUCCUCUGCGCAU
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Structure
        10          20         30        40        50        60 
GAGACAGGGAUUCCUCA--|   G  U  -  UA         U    U       GCGUUUG 
                   GACU CC AG GG  GGGCUUAGC CACU GUGAACA       G
                   CUGA GG UC CC  CUUGAAUCG GUGA CACUUGU       U
UACGCGUCUCCUCUCUUAC^   -  U  A  GC         -    -       GCCGACU 
120       110       100         90         80         70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-27-P3_5p

mirBase accessionMIMAT0038861
Sequence
0- AGGGCUUAGCUCACUUGUGAACA -23
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Co-mature sequence

Pbv-Mir-27-P3_3p

mirBase accessionMIMAT0038862
Sequence
41- UUCACAGUGGCUAAGUUCCGC -62
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