MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-27-P2c

Family name MIR-27 (all species)
Seed UCACAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-27b
Paralogues Xla-Mir-27-P2d  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xla-Mir-27-P4c  Xla-Mir-27-P4d 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cja-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Eca-Mir-27-P2  Ete-Mir-27-P2  Gga-Mir-27-P2  Gja-Mir-27-P2  Hsa-Mir-27-P2  Laf-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmr-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Neu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pab-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Xtr-Mir-27-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 133829110-133829172 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P2c)		 Mir-27-P2c NC_030724.1: 133829110-133829172 [+] UCSC Ensembl
Mir-24-P2c NC_030724.1: 133829567-133829625 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCAGACGUUGACCUUUCUACCAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUCUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAGGGCGAGGGGAAGGGACAA
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Structure
        10          20        30        40        50        60  
GCUCAGACGUUGACCUU--|  ACCA                  AUUG       GUGAUUGA 
                   UCU    AGGUGCAGAGCUUAGCUG    GUGAACA        \
                   AGA    UCCACGUCUUGAAUCGGU    CACUUGU        U
AACAGGGAAGGGGAGCGGG^  GAAG                  GA--       UUCUCCUC 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-27-P2c_5p*
mirBase accessionMIMAT0046560
Sequence 
0- AGAGCUUAGCUGAUUGGUGAACA -23
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Mature sequence

Xla-Mir-27-P2c_3p
mirBase accessionMIMAT0046561
Sequence 
42- UUCACAGUGGCUAAGUUCUGC -63
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