Mir-27-P2

MirGeneDB ID

Cmi-Mir-27-P2

Family name

MIR-27 (all species)

Seed

UCACAGU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-27-P3 Cmi-Mir-27-P4

Orthologues

Aca-Mir-27-P2 Ami-Mir-27-P2 Bta-Mir-27-P2 Cfa-Mir-27-P2 Cja-Mir-27-P2 Cli-Mir-27-P2 Cpi-Mir-27-P2 Cpo-Mir-27-P2 Dno-Mir-27-P2 Dre-Mir-27-P2a Dre-Mir-27-P2b Eca-Mir-27-P2 Ete-Mir-27-P2 Gga-Mir-27-P2 Gja-Mir-27-P2 Gmo-Mir-27-P2b Hsa-Mir-27-P2 Laf-Mir-27-P2 Lch-Mir-27-P2 Loc-Mir-27-P2 Mal-Mir-27-P2a Mal-Mir-27-P2b Mdo-Mir-27-P2 Mml-Mir-27-P2 Mmr-Mir-27-P2 Mmu-Mir-27-P2 Mun-Mir-27-P2 Neu-Mir-27-P2 Oan-Mir-27-P2 Ocu-Mir-27-P2 Pab-Mir-27-P2 Pbv-Mir-27-P2 Pma-Mir-27-o2 Rno-Mir-27-P2 Sha-Mir-27-P2 Spt-Mir-27-P2 Sto-Mir-27-P2 Tgu-Mir-27-P2 Tni-Mir-27-P2b Xla-Mir-27-P2c Xla-Mir-27-P2d Xtr-Mir-27-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635929.1: 195561-195624 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCAUCGAGCCUGGCCUCUCUGGCGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGUUGUUGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAGGGAAUGAUGACUGGGGCAU

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Structure

        10            20        30        40        50        60  
CCCAUCGAGCCUGGCCU----|   GG G                  AUUG       GUGAUUG 
                     CUCU  C AGGUGCAGAGCUUAGCUG    GUGAACA       U
                     GAGA  G UCCACGUCUUGAAUCGGU    CACUUGU       U
UACGGGGUCAGUAGUAAGGGA^   A- -                  GA--       UUCGUUG 
  120       110       100          90        80          70

Deep sequencing

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Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-27-P2_5p*

mirBase accession

None

Sequence

0- CAGAGCUUAGCUGAUUGGUGAACA -24

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Mature sequence

Cmi-Mir-27-P2_3p

mirBase accession

None

Sequence

42- UUCACAGUGGCUAAGUUCUGCA -64

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