Mir-27-P2

MirGeneDB ID

Ami-Mir-27-P2

Family name

MIR-27 (all species)

Seed

UCACAGU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-27b

Paralogues

Ami-Mir-27-P3

Orthologues

Aca-Mir-27-P2 Bta-Mir-27-P2 Cfa-Mir-27-P2 Cja-Mir-27-P2 Cli-Mir-27-P2 Cmi-Mir-27-P2 Cpi-Mir-27-P2 Cpo-Mir-27-P2 Dno-Mir-27-P2 Dre-Mir-27-P2a Dre-Mir-27-P2b Eca-Mir-27-P2 Ete-Mir-27-P2 Gga-Mir-27-P2 Gja-Mir-27-P2 Gmo-Mir-27-P2b Hsa-Mir-27-P2 Laf-Mir-27-P2 Lch-Mir-27-P2 Loc-Mir-27-P2 Mal-Mir-27-P2a Mal-Mir-27-P2b Mdo-Mir-27-P2 Mml-Mir-27-P2 Mmr-Mir-27-P2 Mmu-Mir-27-P2 Mun-Mir-27-P2 Neu-Mir-27-P2 Oan-Mir-27-P2 Ocu-Mir-27-P2 Pab-Mir-27-P2 Pbv-Mir-27-P2 Pma-Mir-27-o2 Rno-Mir-27-P2 Sha-Mir-27-P2 Spt-Mir-27-P2 Sto-Mir-27-P2 Tgu-Mir-27-P2 Tni-Mir-27-P2b Xla-Mir-27-P2c Xla-Mir-27-P2d Xtr-Mir-27-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713772.1: 16892748-16892810 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-27-P2)

Mir-24-P2 NW_017713772.1: 16892177-16892236 [-] UCSC
Mir-27-P2 NW_017713772.1: 16892748-16892810 [-] UCSC
Mir-23-P2 NW_017713772.1: 16892980-16893039 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GCUCAGACGGAGACCUCUCUGACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCCCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAAGGUGAGAUGGAAACAUUU

Get precursor sequence

Structure

        10            20        30        40        50        60  
GCUCAGACGGAGACCUC----|  GACA                  AUUG      AGUGAUUGA 
                     UCU    AGGUGCAGAGCUUAGCUG    GUGAAC         \
                     AGA    UCCACGUCUUGAAUCGGU    CACUUG         U
UUUACAAAGGUAGAGUGGAAG^  AG--                  GA--      UUUCCCCUU 
 120       110       100          90        80          70