Mir-27-P2a

MirGeneDB ID

Mal-Mir-27-P2a

Family name

MIR-27 (all species)

Seed

UCACAGU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-27-P1 Mal-Mir-27-P2b Mal-Mir-27-P3 Mal-Mir-27-P4a Mal-Mir-27-P4b

Orthologues

Aca-Mir-27-P2 Ami-Mir-27-P2 Bta-Mir-27-P2 Cfa-Mir-27-P2 Cja-Mir-27-P2 Cli-Mir-27-P2 Cmi-Mir-27-P2 Cpi-Mir-27-P2 Cpo-Mir-27-P2 Dno-Mir-27-P2 Dre-Mir-27-P2a Eca-Mir-27-P2 Ete-Mir-27-P2 Gga-Mir-27-P2 Gja-Mir-27-P2 Hsa-Mir-27-P2 Laf-Mir-27-P2 Lch-Mir-27-P2 Loc-Mir-27-P2 Mdo-Mir-27-P2 Mml-Mir-27-P2 Mmr-Mir-27-P2 Mmu-Mir-27-P2 Mun-Mir-27-P2 Neu-Mir-27-P2 Oan-Mir-27-P2 Ocu-Mir-27-P2 Pab-Mir-27-P2 Pbv-Mir-27-P2 Pma-Mir-27-o2 Rno-Mir-27-P2 Sha-Mir-27-P2 Spt-Mir-27-P2 Sto-Mir-27-P2 Tgu-Mir-27-P2 Xtr-Mir-27-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884846.1: 922849-922910 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGUGAAUCUGCUGUUCCUGAUCAGGUGCAGAGCUUAGUUAGCUGCUGAACAGGGAGUCUUAGCGAUUUGUUCACAGUGGCUAAGUUCUUCACUUGUACAGAGAUAAUGGACAUGCAUGAC

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Structure

        10          20        30        40        50        60 
UGUGUGAAUCUGCUGUUC--|  AU      C            G   C     AGGGAGUC 
                    CUG  CAGGUG AGAGCUUAGUUA CUG UGAAC        U
                    GAC  GUUCAC UCUUGAAUCGGU GAC ACUUG        U
CAGUACGUACAGGUAAUAGA^  AU      U            -   -     UUUAGCGA 
120       110       100        90        80          70

Deep sequencing

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Comment

There is a second Drosha cut -1 on both arms.

3' NTU

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-27-P2a_5p*

mirBase accession

None

Sequence

0- AGAGCUUAGUUAGCUGCUGAAC -22

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Mature sequence

Mal-Mir-27-P2a_3p

mirBase accession

None

Sequence

41- UUCACAGUGGCUAAGUUCUUC -62

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