MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-27-P2

Family name MIR-27 (all species)
Seed UCACAGU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-27-P3a  Sto-Mir-27-P3b  Sto-Mir-27-P4 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cja-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Eca-Mir-27-P2  Ete-Mir-27-P2  Gga-Mir-27-P2  Gja-Mir-27-P2  Gmo-Mir-27-P2b  Hsa-Mir-27-P2  Laf-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mal-Mir-27-P2a  Mal-Mir-27-P2b  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmr-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Neu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pab-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Tgu-Mir-27-P2  Tni-Mir-27-P2b  Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xtr-Mir-27-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01002700.1: 246153-246216 [-]
Precursor
(pre-Mir +30nt flank)
UCCAUCGAAUAUGACCUUUCUGGUGAGGUACAGAGCUUAGCUGAUUGGUGAACAGUGAUCAUUUUUGCUUUGUUCACAGUGGCUAAGUUCUGCACCAACGAGAGGGAAUGAUGAUCAGGGCUGU
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Structure
        10           20        30        40        50        60  
UCCAUCGAAUAUGACCU---|   G  GA   A             AUUG       GUGAUCA 
                    UUCU GU  GGU CAGAGCUUAGCUG    GUGAACA       U
                    GAGA CA  CCA GUCUUGAAUCGGU    CACUUGU       U
UGUCGGGACUAGUAGUAAGG^   G  A-   C             GA--       UUCGUUU 
  120       110       100         90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Sto-Mir-27-P2_5p*
mirBase accessionNone
Sequence 
0- CAGAGCUUAGCUGAUUGGUGAACA -24
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Mature sequence

Sto-Mir-27-P2_3p
mirBase accessionNone
Sequence 
42- UUCACAGUGGCUAAGUUCUGCA -64
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