MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-24-P2

Family name MIR-24 (all species)
Seed GGCUCAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-24-1
Paralogues Ami-Mir-24-P3 
Orthologues Aca-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Gmo-Mir-24-P2b  Hsa-Mir-24-P2  Laf-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Tni-Mir-24-P2b  Xla-Mir-24-P2c  Xla-Mir-24-P2d  Xtr-Mir-24-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713772.1: 16892177-16892236 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-24-P2)		 Mir-24-P2 NW_017713772.1: 16892177-16892236 [-] UCSC
Mir-27-P2 NW_017713772.1: 16892748-16892810 [-] UCSC
Mir-23-P2 NW_017713772.1: 16892980-16893039 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUUCCAGGCUGUGGAUGGACCCGUCCUCCAGUGCCUACUGAGCUGAUAUCAGUUCUGAUUUUACAUACUGGCUCAGUUCAGCAGGAACAGGAGUCGAGCCCCAAAGCAAAAAGAUGUACC
Get precursor sequence
Structure
        10        20           30        40        50          
GUUCCAGGCUGUGGAUGGACC---| UC    A  G   A         UA     UCUGAU 
                        CG  CUCC GU CCU CUGAGCUGA  UCAGU      \
                        GC  GAGG CA GGA GACUUGACU  GGUCA      U
CCAUGUAGAAAAACGAAACCCCGA^ U-    A  A   C         C-     UACAUU 
.       110       100         90        80         70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
To
Star sequence

Ami-Mir-24-P2_5p*
mirBase accessionMIMAT0038061
Sequence 
0- GUGCCUACUGAGCUGAUAUCAGU -23
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Mature sequence

Ami-Mir-24-P2_3p
mirBase accessionMIMAT0038062
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
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