MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-24-P2b

Family name MIR-24 (all species)
Seed GGCUCAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-24-3
Paralogues Dre-Mir-24-P1  Dre-Mir-24-P2a  Dre-Mir-24-P3  Dre-Mir-24-P4a 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Gmo-Mir-24-P2b  Hsa-Mir-24-P2  Laf-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Tni-Mir-24-P2b  Xtr-Mir-24-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr8: 30162533-30162590 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P2b)
Mir-24-P2b chr8: 30162533-30162590 [-] UCSC Ensembl
Mir-27-P2b chr8: 30167449-30167508 [-] UCSC Ensembl
Mir-23-P2b chr8: 30167636-30167695 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAUGAGAGAUAGAUGGAGCUGGCCUCCCGUGCCUACUGAGCUGAUUACAGUACUGUGCAAACACUGGCUCAGUUCAGCAGGAACAGGAGUCUGGUCCACAAACUCCACCAAACACU
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Structure
        10          20        30        40        50         
CAUAUGAGAGAUAGAUGGA--| UG C    C  G   A         UUA    ACUGU 
                     GC  G CUCC GU CCU CUGAGCUGA   CAGU     \
                     UG  C GAGG CA GGA GACUUGACU   GUCA     G
UCACAAACCACCUCAAACACC^ GU U    A  A   C         CG-    CAAAC 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm and this arm is highly expressed relative to the corresponding 3p arm.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-24-P2b_5p*

mirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUUACAGU -23
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Mature sequence

Dre-Mir-24-P2b_3p

mirBase accessionMIMAT0001792
Sequence
36- UGGCUCAGUUCAGCAGGAACAG -58
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Proposed targets TargetScanFish: dre-miR-24