MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-24-P2

Family name MIR-24 (all species)
Seed GGCUCAG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-24-P1  Loc-Mir-24-P3  Loc-Mir-24-P4 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Gmo-Mir-24-P2b  Hsa-Mir-24-P2  Laf-Mir-24-P2  Lch-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Tni-Mir-24-P2b  Xla-Mir-24-P2c  Xla-Mir-24-P2d  Xtr-Mir-24-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG2: 32737407-32737466 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUAACAGCUCUUAUGGACCUGGCCUCCUGUGCCUACUGAGCUGAUAACAGUUCUAAUUGUACACACUGGCUCAGUUCAGCAGGAACAGGAGUCUGGCCCCACAGCCAAAUCGAGGAAG
Get precursor sequence
Structure
        10        20            30        40        50          
AGGUAACAGCUCUUAUGGACCU    ----|     G   A         UAA    UCUAAU 
                      GGCC    UCCUGU CCU CUGAGCUGA   CAGU      \
                      CCGG    AGGACA GGA GACUUGACU   GUCA      U
GAAGGAGCUAAACCGACACC--    UCUG^     A   C         CG-    CACAUG 
.       110         100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere are Drosha sites +1 and -1 on the 5p arm.
3' NTU Yes
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-24-P2_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAUAACAGU -23
Get sequence
Mature sequence

Loc-Mir-24-P2_3p
mirBase accessionNone
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence