MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-24-P2c

Family name MIR-24 (all species)
Seed GGCUCAG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-24a-2
Paralogues Xla-Mir-24-P2d  Xla-Mir-24-P3c  Xla-Mir-24-P3d 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cmi-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Hsa-Mir-24-P2  Laf-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Xtr-Mir-24-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030724.1: 133829567-133829625 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P2c)		 Mir-27-P2c NC_030724.1: 133829110-133829172 [+] UCSC Ensembl
Mir-24-P2c NC_030724.1: 133829567-133829625 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCUACACAUGUGAUGGACCUGUCCUCUUGUGCCUACUGAACUGAUAUCAGUUCUAUUUCAUACACUGGCUCAGUUCAGCAGGAACAGGAGUUGGGCCCUUGAGCAAAGCACUGGCAA
Get precursor sequence
Structure
        10           20        30        40        50         
GUUCUACACAUGUGAUGGA---|   UC       G   A         UA     UCUAU 
                      CCUG  CUCUUGU CCU CUGAACUGA  UCAGU     U
                      GGGU  GAGGACA GGA GACUUGACU  GGUCA     U
AACGGUCACGAAACGAGUUCCC^   U-       A   C         C-     CAUAC 
       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
-   +
Em
Star sequence

Xla-Mir-24-P2c_5p*
mirBase accessionMIMAT0046550
Sequence 
0- GUGCCUACUGAACUGAUAUCAGU -23
Get sequence
Mature sequence

Xla-Mir-24-P2c_3p
mirBase accessionMIMAT0046551
Sequence 
37- UGGCUCAGUUCAGCAGGAACAG -59
Get sequence