MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-27-P4

Family name MIR-27 (all species)
Seed UCACAGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-27-P1  Lch-Mir-27-P2  Lch-Mir-27-P3 
Orthologues Cmi-Mir-27-P4  Dre-Mir-27-P4a  Gmo-Mir-27-P4a  Gmo-Mir-27-P4b  Loc-Mir-27-P4  Mal-Mir-27-P4a  Mal-Mir-27-P4b  Sto-Mir-27-P4  Tni-Mir-27-P4a  Tni-Mir-27-P4b  Xla-Mir-27-P4c  Xla-Mir-27-P4d  Xtr-Mir-27-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127091.1: 1152893-1152956 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCCACAGCAGAUCUCUUUGAAAUGGCACAGAGCUUAGCUAUAUGGAGAGCAGUGUAUCUGUCAGUAUCUUGUUCACAGUGGCUAAGUUUAGUGCCCAAAGAGAGAAAAGGAGUGGGUAGUGU
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Structure
        10        20          30        40        50        60  
CUCCCACAGCAGAUCUCUUUGAAAU--|    A            A  GA     GUGUAUCU 
                           GGCAC GAGCUUAGCUAU UG  GAGCA        G
                           CCGUG UUUGAAUCGGUG AC  CUUGU        U
UGUGAUGGGUGAGGAAAAGAGAGAAAC^    A            -  A-     UCUAUGAC 
  120       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Star sequence

Lch-Mir-27-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- AGAGCUUAGCUAUAUGGAGAGCA -23
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Mature sequence

Lch-Mir-27-P4_3p (predicted)

mirBase accessionNone
Sequence
43- UUCACAGUGGCUAAGUUUAGU -64
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