MirGeneDB ID | Lch-Mir-27-P4 |
---|---|
Family name | MIR-27 (all species) |
Seed | UCACAGU |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-27-P1 Lch-Mir-27-P2 Lch-Mir-27-P3 |
Orthologues | Cmi-Mir-27-P4 Dre-Mir-27-P4a Gmo-Mir-27-P4a Gmo-Mir-27-P4b Loc-Mir-27-P4 Mal-Mir-27-P4a Mal-Mir-27-P4b Sto-Mir-27-P4 Tni-Mir-27-P4a Tni-Mir-27-P4b Xla-Mir-27-P4c Xla-Mir-27-P4d Xtr-Mir-27-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH127091.1: 1152893-1152956 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | CUCCCACAGCAGAUCUCUUUGAAAUGGCACAGAGCUUAGCUAUAUGGAGAGCAGUGUAUCUGUCAGUAUCUUGUUCACAGUGGCUAAGUUUAGUGCCCAAAGAGAGAAAAGGAGUGGGUAGUGUGet precursor sequence |
Structure | 10 20 30 40 50 60 CUCCCACAGCAGAUCUCUUUGAAAU--| A A GA GUGUAUCU GGCAC GAGCUUAGCUAU UG GAGCA G CCGUG UUUGAAUCGGUG AC CUUGU U UGUGAUGGGUGAGGAAAAGAGAGAAAC^ A - A- UCUAUGAC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Star sequence | Lch-Mir-27-P4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGAGCUUAGCUAUAUGGAGAGCA -23
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|
Mature sequence | Lch-Mir-27-P4_3p (predicted) |
mirBase accession | None |
Sequence |
43- UUCACAGUGGCUAAGUUUAGU -64
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|