| MirGeneDB ID | Loc-Mir-27-P4 |
|---|
| Family name |
MIR-27 (all species) |
|---|
| Seed |
UCACAGU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
|
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| Paralogues |
Loc-Mir-27-P1
Loc-Mir-27-P2
Loc-Mir-27-P3
|
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| Orthologues |
Cmi-Mir-27-P4
Dre-Mir-27-P4a
Gmo-Mir-27-P4a
Gmo-Mir-27-P4b
Lch-Mir-27-P4
Mal-Mir-27-P4a
Mal-Mir-27-P4b
Sto-Mir-27-P4
Tni-Mir-27-P4a
Tni-Mir-27-P4b
Xla-Mir-27-P4c
Xla-Mir-27-P4d
Xtr-Mir-27-P4
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(LepOcu1) |
LG19: 5780510-5780573 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCCUGUAGCCCAGUCCCUUUCUGAAGGCACAGAGCUUAGCUAAUUGGCGAGCAUUGUUCCUAUCAAUAUAUUGUUCACAGUGGCUAAGUUCAGUGCCCGAAGUGAAACAGUGGAUGGGAUGUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCCUGUAGCCCAGUCCCUUU--| GAA A A GC UUGUUCCU
CU GGCAC GAGCUUAGCUA UUG GAGCA A
GA CCGUG CUUGAAUCGGU GAC CUUGU U
CGUGUAGGGUAGGUGACAAAGU^ AGC A - A- UAUAUAAC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-27-P4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCUUAGCUAAUUGGCGAGCA -23
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-27-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUCACAGUGGCUAAGUUCAGU -64
Get sequence
|
|---|
