MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-27-P4a

Family name MIR-27 (all species)
Seed UCACAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-27e
Paralogues Tni-Mir-27-P1  Tni-Mir-27-P2b  Tni-Mir-27-P3  Tni-Mir-27-P4b 
Orthologues Cmi-Mir-27-P4  Dre-Mir-27-P4a  Gmo-Mir-27-P4a  Lch-Mir-27-P4  Loc-Mir-27-P4  Mal-Mir-27-P4a  Sto-Mir-27-P4  Xtr-Mir-27-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 1: 16059190-16059253 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4a)		 Mir-23-P4a 1: 16058804-16058867 [+] UCSC Ensembl
Mir-27-P4a 1: 16059190-16059253 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAACUCAGCCACCCUCUUGCUGAAGGCACAGAGCUUAGCUAAUUGGUGAGCAUUGAUCCCUGCUAUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCUGAGGUGAAAUAGUUGAUUCGGCAGAG
Get precursor sequence
Structure
        10          20        30        40        50        60  
CAAACUCAGCCACCCUC--|UG  GA      A           AUUG       UUGAUCCC 
                   U  CU  AGGCAC GAGCUUAGCUA    GUGAGCA        U
                   A  GG  UCCGUG CUUGAAUCGGU    CACUUGU        G
GAGACGGCUUAGUUGAUAA^GU  AG      A           GA--       UGUGUAUC 
  120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-27-P4a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAGCUUAGCUAAUUGGUGAGCA -23
Get sequence
Mature sequence

Tni-Mir-27-P4a_3p
mirBase accessionMIMAT0003068
Sequence 
43- UUCACAGUGGCUAAGUUCAGU -64
Get sequence