Mir-181-P2c

MirGeneDB ID

Rno-Mir-181-P2c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-181d

Paralogues

Rno-Mir-181-P1a Rno-Mir-181-P1b Rno-Mir-181-P1c Rno-Mir-181-P2a Rno-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr19: 25290062-25290123 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P2c chr19: 25290062-25290123 [-] UCSC Ensembl
Mir-181-P1c chr19: 25290233-25290293 [-] UCSC Ensembl
Mir-23-P3 chr19: 25318591-25318649 [+] UCSC Ensembl
Mir-27-P3 chr19: 25318749-25318811 [+] UCSC Ensembl
Mir-24-P3 chr19: 25318887-25318944 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCCUCAGGCCACAGCAAAGGUCACAAUUAACAUUCAUUGUUGUCGGUGGGUUGUGAGGAGAAGACCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAAACAACAGUCUGAGAG

Get precursor sequence

Structure

        10        20          30        40        50        60  
CUGCCUCAGGCCACAGCAAA--|      AUUA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       \
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       G
GAGAGUCUGACAACAAACCGGG^      CAC-         G --          ACCAGAA 
120       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-181-P2c_5p

mirBase accession

MIMAT0005299

Sequence

0- AACAUUCAUUGUUGUCGGUGGGUU -24

Get sequence

Proposed targets

microrna.org: MIMAT0005299
TargetScanVert: rno-miR-181d-5p
miRDB: MIMAT0005299

Star sequence

Rno-Mir-181-P2c_3p*

mirBase accession

MIMAT0017296

Sequence

42- CCACCGGGGGAUGAAUGUCA -62

Get sequence

Proposed targets

TargetScanVert: rno-miR-181d-3p
miRDB: MIMAT0017296