MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-181d
Paralogues Cfa-Mir-181-P1a  Cfa-Mir-181-P1b  Cfa-Mir-181-P1c  Cfa-Mir-181-P2a  Cfa-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr20: 48593159-48593221 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c)
Mir-181-P2c chr20: 48593159-48593221 [-] UCSC Ensembl
Mir-181-P1c chr20: 48593343-48593403 [-] UCSC Ensembl
Mir-23-P3 chr20: 48620332-48620390 [+] UCSC Ensembl
Mir-27-P3 chr20: 48620555-48620616 [+] UCSC Ensembl
Mir-24-P3 chr20: 48620685-48620744 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCAUUAGGCCACAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACGGAGGCCAGACCCACCGAGGGAUGAAUGUCACUGUGGCUGGGCCAGACAUAGCCUGAGGGG
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Structure
        10        20          30        40        50        60  
CUCCAUUAGGCCACAGCGAA--|      AUCA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       C
                      UCGGUGU    UGUAAGUAG G  AGCCACCCAG       G
GGGGAGUCCGAUACAGACCGGG^      CAC-         G --          ACCGGAG 
 120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-181-P2c_5p

mirBase accessionMIMAT0006636
Sequence
0- AACAUUCAUUGUUGUCGGUGGGUU -24
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Proposed targets TargetScanVert: cfa-miR-181d
miRDB: MIMAT0006636
Star sequence

Cfa-Mir-181-P2c_3p*

mirBase accessionNone
Sequence
42- CCCACCGAGGGAUGAAUGUCA -63
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