MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-181c
Paralogues Oan-Mir-181-P1a  Oan-Mir-181-P1b  Oan-Mir-181-P1c  Oan-Mir-181-P2a  Oan-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Eca-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Ocu-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041749.1: 108839013-108839074 [+]
Clustered miRNAs
(< 50kb from Mir-181-P2c)
Mir-181-P1c NC_041749.1: 108838650-108838712 [+]
Mir-181-P2c NC_041749.1: 108839013-108839074 [+]
Precursor
(pre-Mir +30nt flank)
GUUGACAUUCUUUGUUGAAAAGUCACAAUCAACAUUCAUUACUGUCGGUGGGUUGUGAUAAAUGAAAAAAACUCACCGCCAGAUGAAUGCCACUGUGGCUAGGCAUGCCGCCGACCUGAAGC
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Structure
        10        20          30        40        50        60  
GUUGACAUUCUUUGUUGAAA--|      AUCAA       UA   U        UGUGAUAA 
                      AGUCACA     CAUUCAU  CUG CGGUGGGU        \
                      UCGGUGU     GUAAGUA  GAC GCCACUCA        A
CGAAGUCCAGCCGCCGUACGGA^      CACC-       --   C        AAAAAAGU 
120       110       100        90           80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-181-P2c_5p

mirBase accessionMIMAT0007058
Sequence
0- AACAUUCAUUACUGUCGGUGGGU -23
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Star sequence

Oan-Mir-181-P2c_3p*

mirBase accessionMIMAT0007059
Sequence
41- CUCACCGCCAGAUGAAUGCCA -62
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