MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Horse (Equus caballus)
MiRBase ID
Paralogues Eca-Mir-181-P1a  Eca-Mir-181-P1b  Eca-Mir-181-P1c  Eca-Mir-181-P2a  Eca-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009154.1: 46208382-46208444 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c)
Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGUGGGUUGUGAGAGCGAAGGUCACAAUCAACAUUCAUUGUUGUCGGUGGGUUGUGAGGACGGAGGCCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCUGGACACAGCCUGAGGGG
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Structure
        10        20          30        40        50        60  
CGGUGGGUUGUGAGAGCGAA--|      AUCA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       C
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       G
GGGGAGUCCGACACAGGUCGGG^      CAC-         G --          ACCGGAG 
 120       110       100         90          80        70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-181-P2c_5p

mirBase accessionNone
Sequence
0- AACAUUCAUUGUUGUCGGUGGGUU -24
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Star sequence

Eca-Mir-181-P2c_3p* (predicted)

mirBase accessionNone
Sequence
43- CCACCGGGGGAUGAAUGUCA -63
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