MirGeneDB ID | Tni-Mir-181-P2c1-v1 |
Family name |
MIR-181 (all species) |
Seed |
ACAUUCA |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-181-P1a1
Tni-Mir-181-P1b1
Tni-Mir-181-P1c1
Tni-Mir-181-P1c2
Tni-Mir-181-P2a1
Tni-Mir-181-P2b1
Tni-Mir-181-P2c1-v2
Tni-Mir-181-P2c2
|
Orthologues |
Aca-Mir-181-P2c
Ami-Mir-181-P2c
Bta-Mir-181-P2c
Cfa-Mir-181-P2c
Cja-Mir-181-P2c
Cmi-Mir-181-P2c
Cpi-Mir-181-P2c
Dno-Mir-181-P2c
Dre-Mir-181-P2c1
Eca-Mir-181-P2c
Ete-Mir-181-P2c
Gmo-Mir-181-P2c1
Hsa-Mir-181-P2c
Laf-Mir-181-P2c
Lch-Mir-181-P2c
Loc-Mir-181-P2c
Mal-Mir-181-P2c1
Mdo-Mir-181-P2c
Mml-Mir-181-P2c
Mmr-Mir-181-P2c
Mmu-Mir-181-P2c
Mun-Mir-181-P2c
Neu-Mir-181-P2c
Oan-Mir-181-P2c
Ocu-Mir-181-P2c
Pab-Mir-181-P2c
Pbv-Mir-181-P2c
Rno-Mir-181-P2c
Sha-Mir-181-P2c
Sto-Mir-181-P2c
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
15: 5125603-5125664 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGCUGCUGGCAGAGACCAAAGGUCACAGUCAACAUUCAUUGCUGUCGCUGGGUUGGACUGUGUAGAAAAGCUCACUGAACAAUGAGUGCAACUGUGGCCCAGAUCUGCCCAACUCUUGUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGCUGCUGGCAGAGACCAAA---| CAA CUG C UGGACUG
GGUCACAGU CAUUCAUUG UCG UGGGU U
CCGGUGUCA GUGAGUAAC AGU ACUCG G
CUCUGUUCUCAACCCGUCUAGAC^ AC- A-- C AAAAGAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-181-P2c1-v1_5p |
mirBase accession | None |
Sequence |
0- AACAUUCAUUGCUGUCGCUGGGU -23
Get sequence
|
Star sequence |
Tni-Mir-181-P2c1-v1_3p* |
mirBase accession | None |
Sequence |
41- UCACUGAACAAUGAGUGCAAC -62
Get sequence
|