Mir-181-P1c2

MirGeneDB ID

Tni-Mir-181-P1c2

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-181a-2

Paralogues

Tni-Mir-181-P1a1 Tni-Mir-181-P1b1 Tni-Mir-181-P1c1 Tni-Mir-181-P2a1 Tni-Mir-181-P2b1 Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c1-v2 Tni-Mir-181-P2c2

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

Un_random: 58989026-58989088 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCAACACCAGUUUUUUCAGGUCUUUGGGGAACAUUCAACGCUGUCGGUGAGUUUGGUGACUCAGAAAAAAACCAUCGAGCGUUGAGUGUACCUUUAGGCUUGAGCUCCCGUCUGAAAAACUG

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Structure

        10           20        30        40        50        60  
GUCAACACCAGUUUUUU---|      UU   GA           UG      A    GGUGAC 
                    CAGGUCU  GGG  ACAUUCAACGC  UCGGUG GUUU      U
                    GUUCGGA  UCC  UGUGAGUUGCG  AGCUAC CAAA      C
GUCAAAAAGUCUGCCCUCGA^      UU   A-           --      -    AAAAGA 
 120       110       100         90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-181-P1c2_5p

mirBase accession

MIMAT0003050

Sequence

0- AACAUUCAACGCUGUCGGUGAGUUU -25

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Star sequence

Tni-Mir-181-P1c2_3p*

mirBase accession

None

Sequence

41- ACCAUCGAGCGUUGAGUGUACC -63

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