Mir-181-P1c

MirGeneDB ID

Loc-Mir-181-P1c

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-181-P1a Loc-Mir-181-P1b Loc-Mir-181-P2a Loc-Mir-181-P2b Loc-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Rno-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG6: 12844223-12844282 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGUACAAGCUCGUUCCCGAUUCCCAGGAAACAUUCAACGCUGUCGGUGAGUUUGUGUCCAAGGGAAACCACUGGCCGUUGAGUGUACCCUGUGCCUCGAACCCGCGUCAUCGUGCAGG

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Structure

        10          20        30        40        50        60 
UGUGUACAAGCUCGUUCC--|  UUCC    AA          CU       A  UUGUGUC 
                    CGA    CAGG  ACAUUCAACG  GUCGGUG GU       \
                    GCU    GUCC  UGUGAGUUGC  CGGUCAC CA       C
GGACGUGCUACUGCGCCCAA^  CCGU    CA          --       -  AAGGGAA 
.       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-181-P1c_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Loc-Mir-181-P1c_3p*

mirBase accession

None

Sequence

38- ACCACUGGCCGUUGAGUGUACC -60

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