Mir-181-P1a

MirGeneDB ID

Loc-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-181-P1b Loc-Mir-181-P1c Loc-Mir-181-P2a Loc-Mir-181-P2b Loc-Mir-181-P2c

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cja-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Eca-Mir-181-P1a Ete-Mir-181-P1a Gga-Mir-181-P1a Gja-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Laf-Mir-181-P1a Lch-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmr-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Neu-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Pab-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG10: 12644268-12644330 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUGUAUUUAUGUGAUGUUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGAGAUAAAUUGAGAAAACCAUCGACCGUUGAUUGUACCCUGCGGCCAGCCUUCAUGUGCUUCGUGGCA

Get precursor sequence

Structure

        10          20        30        40        50        60  
GUUUGUAUUUAUGUGAU--|  U   U   UGA   U      CU       A  UUGAGAUA 
                   GUU GCU CAG   ACA UCAACG  GUCGGUG GU        A
                   CGA CGG GUC   UGU AGUUGC  CAGCUAC CA        A
ACGGUGCUUCGUGUACUUC^  C   C   CCA   U      --       -  AAAGAGUU 
 120       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-181-P1a_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

Get sequence

Star sequence

Loc-Mir-181-P1a_3p*

mirBase accession

None

Sequence

41- ACCAUCGACCGUUGAUUGUACC -63

Get sequence