MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-181-P1a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-181a-1
Paralogues Cfa-Mir-181-P1b  Cfa-Mir-181-P1c  Cfa-Mir-181-P2a  Cfa-Mir-181-P2b  Cfa-Mir-181-P2c 
Orthologues Aca-Mir-181-P1a  Ami-Mir-181-P1a  Bta-Mir-181-P1a  Cja-Mir-181-P1a  Cli-Mir-181-P1a  Cmi-Mir-181-P1a  Cpi-Mir-181-P1a  Cpo-Mir-181-P1a  Dno-Mir-181-P1a  Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Eca-Mir-181-P1a  Ete-Mir-181-P1a  Gga-Mir-181-P1a  Gja-Mir-181-P1a  Gmo-Mir-181-P1a1  Hsa-Mir-181-P1a  Laf-Mir-181-P1a  Lch-Mir-181-P1a  Loc-Mir-181-P1a  Mal-Mir-181-P1a1  Mdo-Mir-181-P1a  Mml-Mir-181-P1a  Mmr-Mir-181-P1a  Mmu-Mir-181-P1a  Mun-Mir-181-P1a  Neu-Mir-181-P1a  Oan-Mir-181-P1a  Ocu-Mir-181-P1a  Pab-Mir-181-P1a  Rno-Mir-181-P1a  Sha-Mir-181-P1a  Spt-Mir-181-P1a  Sto-Mir-181-P1a  Tgu-Mir-181-P1a  Tni-Mir-181-P1a1  Xla-Mir-181-P1a3  Xla-Mir-181-P1a4  Xtr-Mir-181-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr7: 4055465-4055526 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1a)		 Mir-181-P1a chr7: 4055465-4055526 [+] UCSC Ensembl
Mir-181-P2a chr7: 4055651-4055710 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGUUCUGAGUUUAGAGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGAAUUAAAAUCAAAACCAUCGACCGUUGAUUGUACCCUAUAGCUAACCAUCAUCUACUACUCCAUG
Get precursor sequence
Structure
        10         20         30        40        50        60  
AGAGUUCUGAGUUUAGA-    -|  UC  UGA   U      CU       A  UUGGAAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        A
GUACCUCAUCAUCUACUA    U^  UA  CCA   U      --       -  AAACUAAA 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-181-P1a_5p
mirBase accessionMIMAT0006707
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-181a
miRDB: MIMAT0006707
Star sequence

Cfa-Mir-181-P1a_3p*
mirBase accessionNone
Sequence 
40- ACCAUCGACCGUUGAUUGUACC -62
Get sequence