Mir-181-P1a

MirGeneDB ID

Gja-Mir-181-P1a

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-181-P1b Gja-Mir-181-P1c Gja-Mir-181-P2a Gja-Mir-181-P2b

Orthologues

Aca-Mir-181-P1a Ami-Mir-181-P1a Bta-Mir-181-P1a Cfa-Mir-181-P1a Cli-Mir-181-P1a Cmi-Mir-181-P1a Cpi-Mir-181-P1a Cpo-Mir-181-P1a Dno-Mir-181-P1a Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Ete-Mir-181-P1a Gga-Mir-181-P1a Gmo-Mir-181-P1a1 Hsa-Mir-181-P1a Lch-Mir-181-P1a Loc-Mir-181-P1a Mal-Mir-181-P1a1 Mdo-Mir-181-P1a Mml-Mir-181-P1a Mmu-Mir-181-P1a Mun-Mir-181-P1a Oan-Mir-181-P1a Ocu-Mir-181-P1a Rno-Mir-181-P1a Sha-Mir-181-P1a Spt-Mir-181-P1a Sto-Mir-181-P1a Tgu-Mir-181-P1a Tni-Mir-181-P1a1 Xla-Mir-181-P1a3 Xla-Mir-181-P1a4 Xtr-Mir-181-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015169787.1: 910201-910262 [-]

Precursor
(pre-Mir +30nt flank)

GAAUUCUUCUUUCUUGUGGUUGCUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUGGGAUUAAAGUGAAAACCAUCGACCGUUGAUUGUACCCUCCAGCUAACCAUCCUCCUCCUCCUCCUU

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Structure

        10         20         30        40        50        60  
GAAUUCUUCUUUCUUGU-    -|  UC  UGA   U      CU       A  UUGGGAUU 
                  GGUU GCU  AG   ACA UCAACG  GUCGGUG GU        \
                  CCAA CGA  UC   UGU AGUUGC  CAGCUAC CA        A
UUCCUCCUCCUCCUCCUA    U^  CC  CCA   U      --       -  AAAGUGAA 
120       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-181-P1a_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Gja-Mir-181-P1a_3p*

mirBase accession

None

Sequence

40- ACCAUCGACCGUUGAUUGUACC -62

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