MirGeneDB 3.0

MirGeneDB ID

Gja-Mir-181-P2b

Family name MIR-181 (all species)
Seed ACAUUCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-181-P1a  Gja-Mir-181-P1b  Gja-Mir-181-P1c  Gja-Mir-181-P2a 
Orthologues Aca-Mir-181-P2b  Ami-Mir-181-P2b  Bta-Mir-181-P2b  Cfa-Mir-181-P2b  Cja-Mir-181-P2b  Cli-Mir-181-P2b  Cmi-Mir-181-P2b  Cpi-Mir-181-P2b  Cpo-Mir-181-P2b  Dno-Mir-181-P2b  Dre-Mir-181-P2b2  Eca-Mir-181-P2b  Ete-Mir-181-P2b  Gga-Mir-181-P2b  Gmo-Mir-181-P2b2  Hsa-Mir-181-P2b  Laf-Mir-181-P2b  Lch-Mir-181-P2b  Loc-Mir-181-P2b  Mal-Mir-181-P2b2  Mdo-Mir-181-P2b  Mml-Mir-181-P2b  Mmr-Mir-181-P2b  Mmu-Mir-181-P2b  Mun-Mir-181-P2b  Neu-Mir-181-P2b  Oan-Mir-181-P2b  Ocu-Mir-181-P2b  Pab-Mir-181-P2b  Pbv-Mir-181-P2b  Rno-Mir-181-P2b  Sha-Mir-181-P2b  Spt-Mir-181-P2b  Sto-Mir-181-P2b  Tgu-Mir-181-P2b  Tni-Mir-181-P2b1  Xla-Mir-181-P2b3  Xla-Mir-181-P2b4  Xtr-Mir-181-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015173680.1: 1362140-1362199 [-]
Precursor
(pre-Mir +30nt flank)
AGAUUUUCUGUUCAAAUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUAGUUUCAGACAGCUCUCUGGCCAAUGAAUGCAAACUGCGGACCAAACAGCAAAGAGAUGGCAGA
Get precursor sequence
Structure
        10         20         30        40        50        60
AGAUUUUCUGUUCAAAUAA-   -|    AUCAA         CU     U     UUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGG GGGUU     U
                    ACC GGCGU     GUAAGUAAC  CGGUC CUCGA     U
AGACGGUAGAGAAACGACAA   A^    CAAAC         --     U     CAGAC 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Gja-Mir-181-P2b_5p

mirBase accessionNone
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
Star sequence

Gja-Mir-181-P2b_3p*

mirBase accessionNone
Sequence
38- CUCUCUGGCCAAUGAAUGCAAA -60
Get sequence