Mir-181-P2b

MirGeneDB ID

Gja-Mir-181-P2b

Family name

MIR-181 (all species)

Seed

ACAUUCA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-181-P1a Gja-Mir-181-P1b Gja-Mir-181-P1c Gja-Mir-181-P2a

Orthologues

Aca-Mir-181-P2b Ami-Mir-181-P2b Bta-Mir-181-P2b Cfa-Mir-181-P2b Cli-Mir-181-P2b Cmi-Mir-181-P2b Cpi-Mir-181-P2b Cpo-Mir-181-P2b Dno-Mir-181-P2b Dre-Mir-181-P2b2 Ete-Mir-181-P2b Gga-Mir-181-P2b Gmo-Mir-181-P2b2 Hsa-Mir-181-P2b Lch-Mir-181-P2b Loc-Mir-181-P2b Mal-Mir-181-P2b2 Mdo-Mir-181-P2b Mml-Mir-181-P2b Mmu-Mir-181-P2b Mun-Mir-181-P2b Oan-Mir-181-P2b Ocu-Mir-181-P2b Pbv-Mir-181-P2b Rno-Mir-181-P2b Sha-Mir-181-P2b Spt-Mir-181-P2b Sto-Mir-181-P2b Tgu-Mir-181-P2b Tni-Mir-181-P2b1 Xla-Mir-181-P2b3 Xla-Mir-181-P2b4 Xtr-Mir-181-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015173680.1: 1362140-1362199 [-]

Precursor
(pre-Mir +30nt flank)

AGAUUUUCUGUUCAAAUAAUGGCUGCAAUCAACAUUCAUUGCUGUCGGUGGGUUUUAGUUUCAGACAGCUCUCUGGCCAAUGAAUGCAAACUGCGGACCAAACAGCAAAGAGAUGGCAGA

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Structure

        10         20         30        40        50        60
AGAUUUUCUGUUCAAAUAA-   -|    AUCAA         CU     U     UUAGU 
                    UGG CUGCA     CAUUCAUUG  GUCGG GGGUU     U
                    ACC GGCGU     GUAAGUAAC  CGGUC CUCGA     U
AGACGGUAGAGAAACGACAA   A^    CAAAC         --     U     CAGAC 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Gja-Mir-181-P2b_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

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Star sequence

Gja-Mir-181-P2b_3p*

mirBase accession

None

Sequence

38- CUCUCUGGCCAAUGAAUGCAAA -60

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